基于网络药理学方法和分子对接技术分析胆通胶囊治疗胆汁淤积症作用机制
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Analysis of Mechanism of Dantong Capsules in Treating Cholestasis Based on Network Pharmacology Method and Molecular Docking Technique
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    摘要:

    目的:采用网络药理学方法和分子对接技术分析胆通胶囊治疗胆汁淤积症的作用机制。方法:使 用中药系统药理数据库和分析平台(TCMSP)、本草组鉴(HERB)、PharmMapper和Uniprot数据库搜索胆通胶 囊的活性成分及作用靶点。使用GeneCards数据库获取胆汁淤积症的靶点。绘制韦恩图得到药物-疾病交集靶 点。利用Cytoscape 3.10.0软件构建胆通胶囊活性成分-靶点网络,得到胆通胶囊的主要活性成分。将主要活性 成分、药物-疾病交集靶点通过STRING数据库与Cytoscape 3.10.0软件进行蛋白质相互作用(PPI) 网络分析, 得到核心靶点。利用DAVID数据库对核心靶点进行基因本体论(GO) 功能富集分析和京都基因与基因组百科 全书(KEGG) 通路富集分析。使用PubChem数据库与PyMol、AutoDockTools软件将胆通胶囊主要活性成分与 核心靶点进行分子对接。结果:共收集胆通胶囊的活性成分25个,获得疾病靶点1 039个。韦恩图显示,药 物-疾病的交集靶点92个。胆通胶囊活性成分-靶点网络分析结果显示,苏齐内酯、决明内酯、番泻苷E、20- 殷金醇棕榈酸、(-) -儿茶素和棕榈胺A有较高的度值,为胆通胶囊的主要活性成分。PPI网络分析结果显示, 白蛋白(ALB)、有丝分裂原-活化蛋白激酶1(MAPK1)、类视黄醇X受体α(RXRA) 等蛋白在PPI网络中的 度值较高,是核心靶点。GO功能富集分析结果显示,药物-疾病交集靶点在体内主要参与精氨酸分解代谢、尿 素循环、雌激素反应等生物过程。KEGG通路富集分析结果显示,药物-疾病交集靶点在体内主要涉及精氨酸 生物合成、甲状腺癌、内分泌抵抗等信号通路。分子对接结果显示,胆通胶囊的主要活性成分可对核心靶点蛋 白发挥调控作用。结论:胆通胶囊通过多种活性成分作用于胆汁淤积症的多个靶点,发挥多通路治疗的作用。

    Abstract:

    Abstract:Objective:To analyze the mechanism of Dantong Capsules in treating cholestasis based on network pharmacology method and molecular docking technique. Methods: Active ingredients and target proteins of Dantong Capsules were retrieved from the databases including Traditional Chinese Medicine Systems Pharmacology (TCMSP),HERB,PharmMapper and Uniprot. Target proteins related to cholestasis were obtained from the GeneCards database. Venn diagram was employed to identify the intersection of drug-disease target proteins. The network of active ingredients-targets of Dantong Capsules was constructed via Cytoscape 3.10.0 software, and core target proteins were identified. Protein-protein interaction (PPI) network analysis of the main active ingredients and drugs-diseases intersection target proteins was conducted via STRING database and Cytoscape 3.10.0 software. The core target proteins were subjected to Gene Ontology (GO) functional enrichment analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis via the DAVID database. Molecular docking between the main active ingredients of Dantong Capsules and core target proteins was performed via PubChem database, PyMol and AutoDockTools software. Results: A total of 25 active ingredients of Dantong Capsules and 1 039 target proteins related to cholestasis were collected. The Venn diagram revealed 92 common target genes in the drugs-diseases intersection. The network analysis identified suchilactone, toralactone, sennoside E, 20-hexadecanoylingenol, (- ) -catechin and palmidin A as the major active ingredients of Dantong Capsules. PPI network analysis identified proteins such as albumin (ALB),mitogenactivated protein kinase 1 (MAPK1),and retinoid X receptor α (RXRA) as core target proteins. GO functional enrichment analysis indicated involvement in biological processes such as arginine metabolism,urea cycle and estrogen response. KEGG pathway enrichment analysis revealed participation in signaling pathways including arginine biosynthesis, thyroid cancer and endocrine resistance. Molecular docking results demonstrated the regulatory effect of Dantong Capsules' main active ingredients on core target proteins. Conclusion: Dantong Capsules exerts a therapeutic effect on cholestasis through multiple active ingredients targeting various pathways.

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王钦,金智华,蔡亮亮.基于网络药理学方法和分子对接技术分析胆通胶囊治疗胆汁淤积症作用机制[J].新中医,2024,56(8):189-197

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  • 在线发布日期: 2024-04-23
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